PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002481.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 127aa    MW: 14002.2 Da    PI: 8.5368
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002481.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-052143123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             + C+ Cg+ F+r+  L  H+r+H
  Itr_sc002481.1_g00008.1 21 HICTVCGRWFNRRQALLGHMRLH 43
                             68*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.76E-61845No hitNo description
Gene3DG3DSA:3.30.160.609.0E-51943IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.2E-42143IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6792143IPR007087Zinc finger, C2H2
PfamPF139121.2E-52143IPR007087Zinc finger, C2H2
PROSITE patternPS0002802343IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MLINGSSSFN FLPLAQPQQN HICTVCGRWF NRRQALLGHM RLHGSHGWRI LCPHFFNRDH  60
LANVLPRPGI PAVGRQVAAA PPPPIAAPPP PADNALLAQP EVPVELPDLN EPRDYRVPDL  120
NFPPPPA